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Versions of integrated databases

Versions of integrated databases

The NCI-Nature curated and BioCarta data were downloaded from the NCI-Nature PID database. The Reactome (release version 32) was obtained from the website. The downloaded XML files were parsed by using our in-house Python parsers for BioPAX data. The KEGG database also provides their data in the BioPAX format, but the information content was only partial. Thus, we downloaded the data in the KGML format and converted them into the BioPAX format. Several additional data such as enzyme information were also obtained by using the KEGG API.